Open-Source Tool Docs¶

This is the technical reference area for the CALYPR toolchain. It is intentionally behind the product and solution pages so non-technical readers do not have to start with implementation detail.

Data Lake Tools¶

Git-DRS¶

Git-DRS provides Git-style versioning for large DRS-backed research data. Use it when teams need reproducible data references without committing large binaries to Git.

Syfon¶

Syfon is the DRS and storage mediation service. It handles object registration, presigned upload and download URLs, bucket routing, and server-side storage access.

Workflow And Discovery¶

Funnel¶

Funnel implements the GA4GH Task Execution Service API for portable workflow execution across distributed compute environments.

GRIP¶

GRIP provides graph database and query capabilities for complex biomedical relationships and integrated project data.

Data Preparation And Operations¶

Forge¶

Forge validates, publishes, and harmonizes project metadata before it is loaded into shared research systems.

Sifter¶

Sifter supports data extraction and transformation workflows.

Data Client¶

The data client provides command-line operations for CALYPR data workflows, authentication, and project interactions.